代表论文：
1. Junxiao Ren, Zhengzheng Hu, Quanlin Li, Shuang Gu, Fangren Lan, Xiqiong Wang, Jianbo Li, Junying Li, Liwa Shao, Ning Yang* & Congjiao Sun*.Temperature-induced embryonic diapause in chickens is mediated by PKC-NF-κB-IRF1 signaling.[J]. BMC Biology. 2023, 21: 52
2. Qianqian Zhou; Fangren Lan; Shuang Gu; Guangqi Li; Guiqin Wu; Yiyuan Yan; Xiaochang Li; Jiaming Jin; Chaoliang Wen; Congjiao Sun; Ning Yang*. Genetic and microbiome analysis of feed efficiency in laying hens. [J]. Poultry Science, 2023, 102(4):102393
3. Chaoliang Wen; Qinli Gou; Shuang Gu; Qiang Huang; Congjiao Sun; Jiangxia Zheng; Ning Yang*. The cecal ecosystem is a great contributor to intramuscular fat deposition in broilers [J]. Poultry Science, 2023, 102(4): 102568
4. Ming Li, Congjiao Sun, Naiyi Xu, Peipei Bian, Xiaomeng Tian, ... Xiaoxiang Hu*, Yu Jiang*, Ning Yang*.De novo assembly of 20 chicken genomes reveals the undetectable phenomenon for thousands of core genes on micro-chromosomes and sub-telomeric regions.[J]. Molecular Biology and Evolution, 2022, 39(4): msac066
5. Jianbo Li, Congjiao Sun, Jiangxia Zheng, Junying Li, Guoqiang Yi*, Ning Yang*. Time-Course Transcriptional and Chromatin Accessibility Profiling Reveals Genes Associated With Asymmetrical Gonadal Development in Chicken Embryos.[J]. Front Cell Dev Biol. 2022, 3(8)
6. Chaoliang Wen, Chunning Mai, Ronglang Cai, Qinli Gou, Boxuan Zhang, Junying Li, Congjiao Sun & Ning Yang*. Inheritance of the duration of fertility in chickens and its correlation with laying performance.[J]. Genetics Selection Evolution.2022, 54:41
7. Jianbo Li, Xiuan Zhang, Xiqiong Wang, Congjiao Sun, Jiangxia Zheng, Junying Li, Guoqiang Yi* & Ning Yang*. The m6A methylation regulates gonadal sex differentiation in chicken embryo. [J]. Journal of Animal Science and Biotechnology. 2022, 13:52
8. Gu Shuang, Wen Chaoliang, Li Junying, Liu Honghong, Huang Qiang, Zheng Jiangxia; Sun Congjiao; Yang Ning*. Temporal Expression of Myogenic Regulatory Genes in Different Chicken Breeds during Embryonic Development. International Journal of Molecular Sciences, 2022, 23(17)
9. Quanlin Li, Zhongyi Duan, Congjiao Sun, Jiangxia Zheng, Guiyun Xu & Ning Yang*. Genetic variations for the eggshell crystal structure revealed by genome-wide association study in chickens. [J]. BMC Genomics. 2021, 11(2)
10. Chunning Mai, Chaoliang Wen, Zhiyuan Xu, Guiyun Xu, Sirui Chen, Jiangxia Zheng, Congjiao Sun* & Ning Yang*. Genetic basis of negative heterosis for growth traits in chickens revealed by genome-wide gene expression pattern analysis.[J]. Journal of Animal Science and Biotechnology. 2021, 12:52
11. Chaoliang Wen,Wei Yan,Chunning Mai,Zhongyi Duan,Jiangxia Zheng,Congjiao Sun* & Ning Yang*. Joint contributions of the gut microbiota and host genetics to feed efficiency in chickens.[J]. Microbiome, 2021, 9(1)
12. Ying Zhang, Yuxin Song, Jin Gao, Hengyu Zhang, Ning Yang*, Runqing Yang*. Hierarchical mixed-model expedites genome-wide longitudinal association analysis. [J]. Briefings in Bioinformatics, 2021, 22(5): bbab096
13. Junxiao Ren, Quanlin Li, Qinghe Zhang, Michael Clinton, Congjiao Sun, Ning Yang*. Systematic screening of long intergenic noncoding RNAs expressed during chicken embryogenesis.[J]. Poultry Science, 2021, 100(7)
14. Zhuang Liu, Congjiao Sun, Yiyuan Yan, Guangqi Li, Xiao Chang Li, Guiqin Wu, Ning Yang*. Design and evaluation of a custom 50K Infinium SNP array for egg-type chickens.[J]. Poultry Science, 2021, 100(5)
15. Chaoliang Wen, Chunning Mai, Bin Wang, Junying Li, Congjiao Sun* and Ning Yang*. Detrimental effects of excessive fatty acid secretion on female sperm storage in chickens.[J]. Journal of Animal and Biotechnology, 2020, 11(26)
16. Wen Chaoliang, Yan Wei, Sun Congjiao, Ji Congliang, Zhou Qianqian, Zhang Dexiang, Zheng Jiangxia*, Yang Ning*. The gut microbiota is largely independent of host genetics in regulating fat deposition in chickens.[J]. The ISME Journal, 2019, 13(6)
17. Mai Chunning,Wen Chaoliang,Sun Congjiao,Xu Zhiyuan,Chen Sirui,Yang Ning*. Implications of Gene Inheritance Patterns on the Heterosis of Abdominal Fat Deposition in Chickens.[J]. Genes, 2019. 10(10)
18. Yan Wei, Sun Congjiao, Zheng Jiangxia, Wen Chaoliang, Ji Congliang, Zhang Dexiang, Chen Yonghua, Hou Zhuocheng, Yang Ning*. Efficacy of Fecal Sampling as a Gut Proxy in the Study of Chicken Gut Microbiota.[J]. Frontiers in Microbiology, 2019, 10
19. Ren Junxiao, Sun Congjiao, Clinton Michael, Yang Ning*. Dynamic Transcriptional Landscape of the Early Chick Embryo.[J]. Frontiers in Cell and Developmental Biology, 2019,7
20. Bi H., Z. Liu, C. Sun, G. Li, G. Wu, F. Shi, A. Liu, and N. Yang*. Brown eggshell fading with layer ageing: dynamic change in the content of protoporphyrin IX.[J]. Poultry Science, 2018. 97(6)
21. Liu Z., C. Sun, Y. Yan, G. Li, G. Wu, A. Liu, and N. Yang*. Genome-Wide Association Analysis of Age-Dependent Egg Weights in Chickens. [J]. Frontiers in Genetics, 2018. 9: 128
22. Yan Y., G. Wu, A. Liu, C. Sun, W. Han, G. Li, and N. Yang*. Genomic prediction in a nuclear population of layers using single-step models. [J]. Poultry Science, 2018. 97(2)
23. Sun, CJ, Liu, JN, Li, WB, Xu, GY, N. Yang*. Divergent Proteome Patterns of Egg Albumen from Domestic Chicken, Duck, Goose, Turkey, Quail and Pigeon. [J]. Proteomics, 2017. 17: 1700145
24. Yan, W., Sun, C., Yuan, J., N.Yang*. Gut metagenomic analysis reveals prominent roles of Lactobacillus and cecal microbiota in chicken feed efficiency. [J]. Scientific Reports, 2017. 7:45308
25. Han, B.; Lian, L.; Li, X.; Zhao, C.; Qu, L.; Liu, C.; Song, J.; Ning Yang*. Chicken gga-miR-103-3p targets CCNE1 and TFDP2 and inhibits MDCC-MSB1 cell migration. [J]. G3: Genes, Genomes, Genetics, 2016. 6(5): 1277–1285
26. Yuan, J.; Wang, K.; Yi, G.; Ma, M.; Dou, T.; Sun, C.; Qu, L.-J.; Shen, M.; Qu, L.; Ning Yang*. Genome-wide association studies for feed intake and efficiency in two laying periods of chickens. [J]. Genetics Selection Evolution, 2015. 47:82
27. Yi G.; Qu, L.; Chen, S.; Xu, G.; N.Yang*. Genome-wide copy number profiling using high-density SNP array in chickens. [J]. Animal Genetics, 2015. 46(2):148
28. Wang Z., L. Qu, J. Yao, X. Yang, G. Li, Y. Zhang, J. Li, X. Wang, J. Bai, G. Xu, X. Deng*, Ning Yang*, Changxin Wu. An EAV-HP Insertion in 5′ Flanking Region of SLCO1B3 Causes Blue Eggshell in the Chicken. [J]. PLoS Genetics, 2013. 9(1): e1003183
29. Sun, C., Xu, G., Ning Yang*. Differential label-free quantitative proteomic analysis of avian eggshell matrix and uterine fluid proteins associated with eggshell mechanical property. [J]. Proteomics, 2013.13:3523
30. Lian, L.; Qu, L.; Chen, Y.; Lamont, S.J.; N.Yang*. A Systematic Analysis of miRNA Transcriptome in Marek's Disease Virus-Induced Lymphoma Reveals Novel and Differentially Expressed miRNAs. [J]. PLoS ONE, 2012. 7(11): e51003
31. 黄强,文超良*,孙从佼,杨宁*. 鸡肠道微生物组成及其影响因素.[J].中国家禽. 2021, 43(8)
32. 张庆贺,孙从佼,袁经纬,吴桂琴,李光奇,闫奕源,杨宁*. 蛋鸡与肉鸡采食行为差异及候选基因筛选. [J]. 中国家禽. 2020,42(6)
33. 孙从佼,朱宁,秦富,杨宁. 2019年蛋鸡产业发展概况、未来发展趋势及建议[J].中国畜牧杂志,2020,56(3):144-150
34. 文超良, 孙从佼, 杨宁*.从遗传力到肠菌力：概念及研究进展[J]. 遗传, 2019, 41(11): 1023-1040
35. 杨宁.全球家禽业发展趋势、挑战与技术对策[J]. 中国家禽,2019, 41(1):1-4
著作：
1.《家禽生产学》（第三版）（主编）：中国农业出版社，全国高等农林院校“十三五”规划教材
2.《中国畜禽遗传资源（2011-2020年）》（主编）：中国农业出版社
3.《蛋鸡标准化养殖技术图册》（主编）：中国农业科学技术出版社
4.《中国现代农业产业可持续发展战略研究-蛋鸡分册》（主编）：中国农业出版社
5.《中国禽类遗传资源》（主编）：上海科学技术出版社